IL_9O3Y_023

3D structure

PDB id

9O3Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-002 stalled on FPAK-containing nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

9O3Y|1|L5|C|696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3Y_023 not in the Motif Atlas

Homologous match to IL_8GLP_024

Geometric discrepancy: 0.2209

The information below is about IL_8GLP_024

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

9O3Y|1|L5|C|459
9O3Y|1|L5|C|460
*
9O3Y|1|L5|G|695
9O3Y|1|L5|C|696
9O3Y|1|L5|G|697

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain Lr

Large ribosomal subunit protein eL28