IL_9O3Y_035

3D structure

PDB id

9O3Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-002 stalled on FPAK-containing nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AAGG*CAGCAGCACU

Length

14 nucleotides

Bulged bases

9O3Y|1|L5|A|932, 9O3Y|1|L5|C|934, 9O3Y|1|L5|A|935, 9O3Y|1|L5|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3Y|1|L5|A|732
9O3Y|1|L5|A|733
9O3Y|1|L5|G|734
9O3Y|1|L5|G|735
*
9O3Y|1|L5|C|928
9O3Y|1|L5|A|929
9O3Y|1|L5|G|930
9O3Y|1|L5|C|931
9O3Y|1|L5|A|932
9O3Y|1|L5|G|933
9O3Y|1|L5|C|934
9O3Y|1|L5|A|935
9O3Y|1|L5|C|936
9O3Y|1|L5|U|937

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LM

Large ribosomal subunit protein eL14

Chain LS

Large ribosomal subunit protein eL20