IL_9O3Y_115

3D structure

PDB id

9O3Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-002 stalled on FPAK-containing nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG

Length

16 nucleotides

Bulged bases

9O3Y|1|L5|A2M|3785, 9O3Y|1|L5|C|3791, 9O3Y|1|L5|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3Y|1|L5|C|3781
9O3Y|1|L5|5MC|3782
9O3Y|1|L5|A|3783
9O3Y|1|L5|A|3784
9O3Y|1|L5|A2M|3785
9O3Y|1|L5|U|3786
9O3Y|1|L5|G|3787
9O3Y|1|L5|C|3788
9O3Y|1|L5|C|3789
9O3Y|1|L5|U|3790
9O3Y|1|L5|C|3791
9O3Y|1|L5|OMG|3792
*
9O3Y|1|L5|OMC|3808
9O3Y|1|L5|G|3809
9O3Y|1|L5|C|3810
9O3Y|1|L5|G|3811

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

Small ribosomal subunit protein eS32

Chain S2

Small subunit ribosomal RNA; SSU rRNA