IL_9O3Y_187

3D structure

PDB id

9O3Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-002 stalled on FPAK-containing nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CA(PSU)U*ACCUCGGG

Length

12 nucleotides

Bulged bases

9O3Y|1|S2|U|305, 9O3Y|1|S2|G|307

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3Y|1|S2|C|216
9O3Y|1|S2|A|217
9O3Y|1|S2|PSU|218
9O3Y|1|S2|U|219
*
9O3Y|1|S2|A|302
9O3Y|1|S2|C|303
9O3Y|1|S2|C|304
9O3Y|1|S2|U|305
9O3Y|1|S2|C|306
9O3Y|1|S2|G|307
9O3Y|1|S2|G|308
9O3Y|1|S2|G|309

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SI

Small ribosomal subunit protein eS8