IL_9O3Y_198
3D structure
- PDB id
- 9O3Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome bound to IDB-002 stalled on FPAK-containing nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UACA*UGUAA
- Length
- 9 nucleotides
- Bulged bases
- 9O3Y|1|S2|A|554
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9O3Y_198 not in the Motif Atlas
- Geometric match to IL_8OI5_018
- Geometric discrepancy: 0.3762
- The information below is about IL_8OI5_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_76776.4
- Basepair signature
- cWW-L-R-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9O3Y|1|S2|U|530
9O3Y|1|S2|A|531
9O3Y|1|S2|C|532
9O3Y|1|S2|A|533
*
9O3Y|1|S2|U|551
9O3Y|1|S2|G|552
9O3Y|1|S2|U|553
9O3Y|1|S2|A|554
9O3Y|1|S2|A|555
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SJ
- Small ribosomal subunit protein uS4
- Chain Se
- FAU ubiquitin-like and ribosomal protein S30
Coloring options: