IL_9O3Y_252

3D structure

PDB id

9O3Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-002 stalled on FPAK-containing nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3Y|1|S2|G|1604
9O3Y|1|S2|G|1605
9O3Y|1|S2|G|1606
9O3Y|1|S2|A|1607
9O3Y|1|S2|U|1608
9O3Y|1|S2|C|1609
9O3Y|1|S2|G|1610
*
9O3Y|1|S2|C|1629
9O3Y|1|S2|A|1630
9O3Y|1|S2|U|1631
9O3Y|1|S2|G|1632
9O3Y|1|S2|A|1633
9O3Y|1|S2|A|1634
9O3Y|1|S2|C|1635

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SS

Small ribosomal subunit protein uS13

Chain ST

Small ribosomal subunit protein eS19

Chain SZ

Small ribosomal subunit protein eS25