IL_9OV3_006

3D structure

PDB id

9OV3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme

Experimental method

ELECTRON MICROSCOPY

Resolution

3.19 Å

Loop

Sequence

CACAGUGACGGAGC*GGUGGAACGCG

Length

25 nucleotides

Bulged bases

9OV3|1|A|G|204, 9OV3|1|A|C|235

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OV3_006 not in the Motif Atlas

Homologous match to IL_1NBS_010

Geometric discrepancy: 0.4536

The information below is about IL_1NBS_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84409.1

Basepair signature

cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

Number of instances in this motif group

1

Unit IDs

9OV3|1|A|C|194
9OV3|1|A|A|195
9OV3|1|A|C|196
9OV3|1|A|A|197
9OV3|1|A|G|198
9OV3|1|A|U|199
9OV3|1|A|G|200
9OV3|1|A|A|201
9OV3|1|A|C|202
9OV3|1|A|G|203
9OV3|1|A|G|204
9OV3|1|A|A|205
9OV3|1|A|G|206
9OV3|1|A|C|207
*
9OV3|1|A|G|226
9OV3|1|A|G|227
9OV3|1|A|U|228
9OV3|1|A|G|229
9OV3|1|A|G|230
9OV3|1|A|A|231
9OV3|1|A|A|232
9OV3|1|A|C|233
9OV3|1|A|G|234
9OV3|1|A|C|235
9OV3|1|A|G|236

Current chains

Chain A

RNase P RNA component

Nearby chains