IL_9OV6_006

3D structure

PDB id

9OV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme sub-conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CACAGUGACGGAGC*GGUGGAACGCG

Length

25 nucleotides

Bulged bases

9OV6|1|A|G|204, 9OV6|1|A|C|235

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OV6_006 not in the Motif Atlas

Homologous match to IL_1NBS_010

Geometric discrepancy: 0.5894

The information below is about IL_1NBS_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84409.1

Basepair signature

cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

Number of instances in this motif group

1

Unit IDs

9OV6|1|A|C|194
9OV6|1|A|A|195
9OV6|1|A|C|196
9OV6|1|A|A|197
9OV6|1|A|G|198
9OV6|1|A|U|199
9OV6|1|A|G|200
9OV6|1|A|A|201
9OV6|1|A|C|202
9OV6|1|A|G|203
9OV6|1|A|G|204
9OV6|1|A|A|205
9OV6|1|A|G|206
9OV6|1|A|C|207
*
9OV6|1|A|G|226
9OV6|1|A|G|227
9OV6|1|A|U|228
9OV6|1|A|G|229
9OV6|1|A|G|230
9OV6|1|A|A|231
9OV6|1|A|A|232
9OV6|1|A|C|233
9OV6|1|A|G|234
9OV6|1|A|C|235
9OV6|1|A|G|236

Current chains

Chain A

RNase P RNA component

Nearby chains