IL_9OV7_006

3D structure

PDB id

9OV7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme sub-conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.27 Å

Loop

Sequence

CACAGUGACGGAGC*GGUGGAACGCG

Length

25 nucleotides

Bulged bases

9OV7|1|A|G|204, 9OV7|1|A|C|235

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OV7_006 not in the Motif Atlas

Homologous match to IL_1NBS_010

Geometric discrepancy: 0.5884

The information below is about IL_1NBS_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84409.1

Basepair signature

cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

Number of instances in this motif group

1

Unit IDs

9OV7|1|A|C|194
9OV7|1|A|A|195
9OV7|1|A|C|196
9OV7|1|A|A|197
9OV7|1|A|G|198
9OV7|1|A|U|199
9OV7|1|A|G|200
9OV7|1|A|A|201
9OV7|1|A|C|202
9OV7|1|A|G|203
9OV7|1|A|G|204
9OV7|1|A|A|205
9OV7|1|A|G|206
9OV7|1|A|C|207
*
9OV7|1|A|G|226
9OV7|1|A|G|227
9OV7|1|A|U|228
9OV7|1|A|G|229
9OV7|1|A|G|230
9OV7|1|A|A|231
9OV7|1|A|A|232
9OV7|1|A|C|233
9OV7|1|A|G|234
9OV7|1|A|C|235
9OV7|1|A|G|236

Current chains

Chain A

RNase P ribozyme

Nearby chains