IL_9OV8_006

3D structure

PDB id

9OV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme sub-conformation 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CACAGUGACGGAGC*GGUGGAACGCG

Length

25 nucleotides

Bulged bases

9OV8|1|A|G|204, 9OV8|1|A|C|235

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OV8_006 not in the Motif Atlas

Homologous match to IL_1NBS_010

Geometric discrepancy: 0.4536

The information below is about IL_1NBS_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84409.1

Basepair signature

cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

Number of instances in this motif group

1

Unit IDs

9OV8|1|A|C|194
9OV8|1|A|A|195
9OV8|1|A|C|196
9OV8|1|A|A|197
9OV8|1|A|G|198
9OV8|1|A|U|199
9OV8|1|A|G|200
9OV8|1|A|A|201
9OV8|1|A|C|202
9OV8|1|A|G|203
9OV8|1|A|G|204
9OV8|1|A|A|205
9OV8|1|A|G|206
9OV8|1|A|C|207
*
9OV8|1|A|G|226
9OV8|1|A|G|227
9OV8|1|A|U|228
9OV8|1|A|G|229
9OV8|1|A|G|230
9OV8|1|A|A|231
9OV8|1|A|A|232
9OV8|1|A|C|233
9OV8|1|A|G|234
9OV8|1|A|C|235
9OV8|1|A|G|236

Current chains

Chain A

RNase P RNA component

Nearby chains