IL_9OVB_006

3D structure

PDB id

9OVB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme in 5 mM Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

CACAGUGACGGAGC*GGUGGAACGCG

Length

25 nucleotides

Bulged bases

9OVB|1|A|G|204, 9OVB|1|A|C|235

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OVB_006 not in the Motif Atlas

Homologous match to IL_1NBS_010

Geometric discrepancy: 0.4912

The information below is about IL_1NBS_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84409.1

Basepair signature

cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

Number of instances in this motif group

1

Unit IDs

9OVB|1|A|C|194
9OVB|1|A|A|195
9OVB|1|A|C|196
9OVB|1|A|A|197
9OVB|1|A|G|198
9OVB|1|A|U|199
9OVB|1|A|G|200
9OVB|1|A|A|201
9OVB|1|A|C|202
9OVB|1|A|G|203
9OVB|1|A|G|204
9OVB|1|A|A|205
9OVB|1|A|G|206
9OVB|1|A|C|207
*
9OVB|1|A|G|226
9OVB|1|A|G|227
9OVB|1|A|U|228
9OVB|1|A|G|229
9OVB|1|A|G|230
9OVB|1|A|A|231
9OVB|1|A|A|232
9OVB|1|A|C|233
9OVB|1|A|G|234
9OVB|1|A|C|235
9OVB|1|A|G|236

Current chains

Chain A

RNase P RNA component

Nearby chains