IL_9OVC_008

3D structure

PDB id

9OVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme in 10 mM Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CGGAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OVC_008 not in the Motif Atlas

Geometric match to IL_9DFE_075

Geometric discrepancy: 0.2015

The information below is about IL_9DFE_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.4

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

9OVC|1|A|C|347
9OVC|1|A|G|348
9OVC|1|A|G|349
9OVC|1|A|A|350
9OVC|1|A|G|351
*
9OVC|1|A|C|378
9OVC|1|A|G|379
9OVC|1|A|A|380
9OVC|1|A|A|381
9OVC|1|A|G|382

Current chains

Chain A

RNase P ribozyme

Nearby chains