IL_9P6Z_015

3D structure

PDB id

9P6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

GAAC*GAGUUCAAGAGGGC

Length

18 nucleotides

Bulged bases

9P6Z|1|L5|G|409, 9P6Z|1|L5|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P6Z|1|L5|G|387
9P6Z|1|L5|A|388
9P6Z|1|L5|A|389
9P6Z|1|L5|C|390
*
9P6Z|1|L5|G|401
9P6Z|1|L5|A|402
9P6Z|1|L5|G|403
9P6Z|1|L5|U|404
9P6Z|1|L5|U|405
9P6Z|1|L5|C|406
9P6Z|1|L5|A|407
9P6Z|1|L5|A|408
9P6Z|1|L5|G|409
9P6Z|1|L5|A|410
9P6Z|1|L5|G|411
9P6Z|1|L5|G|412
9P6Z|1|L5|G|413
9P6Z|1|L5|C|414

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LP

60S ribosomal protein L17

Chain LY

60S ribosomal protein L26

Chain Ll

60S ribosomal protein L39