IL_9P78_192

3D structure

PDB id

9P78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating rotate 3 with E-site tRNA state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAUAAC*GCUAA(OMU)A(OMC)

Length

15 nucleotides

Bulged bases

9P78|1|S2|OMU|172

QA status

Modified nucleotides: OMU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P78|1|S2|G|145
9P78|1|S2|G|146
9P78|1|S2|A|147
9P78|1|S2|U|148
9P78|1|S2|A|149
9P78|1|S2|A|150
9P78|1|S2|C|151
*
9P78|1|S2|G|167
9P78|1|S2|C|168
9P78|1|S2|U|169
9P78|1|S2|A|170
9P78|1|S2|A|171
9P78|1|S2|OMU|172
9P78|1|S2|A|173
9P78|1|S2|OMC|174

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

Ribosomal protein L24

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24