IL_9P79_154

3D structure

PDB id

9P79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating rotate3 with Z site tRNA state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

9P79|1|L5|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P79|1|L5|G|4680
9P79|1|L5|A|4681
9P79|1|L5|U|4682
9P79|1|L5|U|4683
9P79|1|L5|A|4684
9P79|1|L5|U|4685
*
9P79|1|L5|A|4705
9P79|1|L5|G|4706
9P79|1|L5|A|4707
9P79|1|L5|A|4708
9P79|1|L5|U|4709
9P79|1|L5|C|4710

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Large ribosomal subunit protein eL40