IL_9P79_210

3D structure

PDB id

9P79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating rotate3 with Z site tRNA state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AG(OMG)GCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P79|1|S2|A|599
9P79|1|S2|G|600
9P79|1|S2|OMG|601
9P79|1|S2|G|602
9P79|1|S2|C|603
9P79|1|S2|A|604
9P79|1|S2|A|605
9P79|1|S2|G|606
*
9P79|1|S2|C|636
9P79|1|S2|U|637

Current chains

Chain S2

18S rRNA

Nearby chains

Chain CD

SERPINE1 mRNA-binding protein 1

Chain SC

40S ribosomal protein S2

Chain SJ

40S ribosomal protein S9

Chain Se

Small ribosomal subunit protein eS30