IL_9P79_258

3D structure

PDB id

9P79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating rotate3 with Z site tRNA state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

9P79|1|S2|A|1580, 9P79|1|S2|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P79|1|S2|G|1550
9P79|1|S2|U|1551
9P79|1|S2|G|1552
9P79|1|S2|C|1553
9P79|1|S2|C|1554
9P79|1|S2|U|1555
9P79|1|S2|A|1556
9P79|1|S2|C|1557
9P79|1|S2|C|1558
*
9P79|1|S2|G|1577
9P79|1|S2|U|1578
9P79|1|S2|A|1579
9P79|1|S2|A|1580
9P79|1|S2|C|1581
9P79|1|S2|C|1582

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SD

Small ribosomal subunit protein uS3

Chain SK

40S ribosomal protein S10

Chain SU

40S ribosomal protein S20

Chain Sd

40S ribosomal protein S29