IL_9P7D_024

3D structure

PDB id

9P7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class4 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

9P7D|1|L5|G|666, 9P7D|1|L5|A|667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P7D_024 not in the Motif Atlas

Homologous match to IL_8GLP_028

Geometric discrepancy: 0.5827

The information below is about IL_8GLP_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87975.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

9P7D|1|L5|G|487
9P7D|1|L5|G|488
*
9P7D|1|L5|C|665
9P7D|1|L5|G|666
9P7D|1|L5|A|667
9P7D|1|L5|C|668
9P7D|1|L5|C|669

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain Lr

60S ribosomal protein L28