IL_9P7E_016

3D structure

PDB id

9P7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class5 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GAAC*GAGUUCAAGAGGGC

Length

18 nucleotides

Bulged bases

9P7E|1|L5|G|409, 9P7E|1|L5|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P7E|1|L5|G|387
9P7E|1|L5|A|388
9P7E|1|L5|A|389
9P7E|1|L5|C|390
*
9P7E|1|L5|G|401
9P7E|1|L5|A|402
9P7E|1|L5|G|403
9P7E|1|L5|U|404
9P7E|1|L5|U|405
9P7E|1|L5|C|406
9P7E|1|L5|A|407
9P7E|1|L5|A|408
9P7E|1|L5|G|409
9P7E|1|L5|A|410
9P7E|1|L5|G|411
9P7E|1|L5|G|412
9P7E|1|L5|G|413
9P7E|1|L5|C|414

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CA

Proliferation-associated protein 2G4

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LP

60S ribosomal protein L17

Chain LY

60S ribosomal protein L26

Chain Ll

60S ribosomal protein L39