IL_9P7E_233

3D structure

PDB id

9P7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class5 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GGAGUA(PSU)G*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P7E|1|S2|G|1168
9P7E|1|S2|G|1169
9P7E|1|S2|A|1170
9P7E|1|S2|G|1171
9P7E|1|S2|U|1172
9P7E|1|S2|A|1173
9P7E|1|S2|PSU|1174
9P7E|1|S2|G|1175
*
9P7E|1|S2|U|1186
9P7E|1|S2|G|1187
9P7E|1|S2|A|1188
9P7E|1|S2|A|1189
9P7E|1|S2|A|1190
9P7E|1|S2|C|1191

Current chains

Chain S2

18S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Ln

60S ribosomal protein L41

Chain SX

40S ribosomal protein S23