IL_9P7E_241

3D structure

PDB id

9P7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class5 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GACAGGA(OMU)UG*CUCGAUUC

Length

18 nucleotides

Bulged bases

9P7E|1|S2|G|1285

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P7E|1|S2|G|1281
9P7E|1|S2|A|1282
9P7E|1|S2|C|1283
9P7E|1|S2|A|1284
9P7E|1|S2|G|1285
9P7E|1|S2|G|1286
9P7E|1|S2|A|1287
9P7E|1|S2|OMU|1288
9P7E|1|S2|U|1289
9P7E|1|S2|G|1290
*
9P7E|1|S2|C|1309
9P7E|1|S2|U|1310
9P7E|1|S2|C|1311
9P7E|1|S2|G|1312
9P7E|1|S2|A|1313
9P7E|1|S2|U|1314
9P7E|1|S2|U|1315
9P7E|1|S2|C|1316

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SK

40S ribosomal protein S10

Chain SM

Small ribosomal subunit protein eS12

Chain Sd

40S ribosomal protein S29

Chain Sf

Ubiquitin-40S ribosomal protein S27a