IL_9P7F_028

3D structure

PDB id

9P7F (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

GG*CCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P7F_028 not in the Motif Atlas

Geometric match to IL_2QWY_008

Geometric discrepancy: 0.3403

The information below is about IL_2QWY_008

Detailed Annotation

Single stack bend with SAM intercalation

Broad Annotation

Single stack bend with SAM intercalation

Motif group

IL_75501.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

9P7F|1|L5|G|499
9P7F|1|L5|G|500
*
9P7F|1|L5|C|654
9P7F|1|L5|C|655
9P7F|1|L5|C|656

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18