IL_9P7G_109

3D structure

PDB id

9P7G (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

9P7G|1|L5|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P7G_109 not in the Motif Atlas

Homologous match to IL_8GLP_107

Geometric discrepancy: 0.1216

The information below is about IL_8GLP_107

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28217.4

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

12

Unit IDs

9P7G|1|L5|A|2850
9P7G|1|L5|G|2851
9P7G|1|L5|U|2852
9P7G|1|L5|C|2853
9P7G|1|L5|G|2854
9P7G|1|L5|G|2855
*
9P7G|1|L5|C|3837
9P7G|1|L5|U|3838
9P7G|1|L5|G|3839
9P7G|1|L5|U|3840

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LV

60S ribosomal protein L23