IL_9P7G_162

3D structure

PDB id

9P7G (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GGG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P7G_162 not in the Motif Atlas

Geometric match to IL_8B0X_183

Geometric discrepancy: 0.2023

The information below is about IL_8B0X_183

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

59

Unit IDs

9P7G|1|L5|G|4897
9P7G|1|L5|G|4898
9P7G|1|L5|G|4899
*
9P7G|1|L5|C|4922
9P7G|1|L5|C|4923

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LM

60S ribosomal protein L14