IL_9P7H_015

3D structure

PDB id

9P7H (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human eEF1A-A/T-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

9P7H|1|L5|A|349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P7H_015 not in the Motif Atlas

Homologous match to IL_8GLP_018

Geometric discrepancy: 0.1107

The information below is about IL_8GLP_018

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9P7H|1|L5|G|348
9P7H|1|L5|A|349
9P7H|1|L5|C|350
*
9P7H|1|L8|G|25
9P7H|1|L8|C|26

Current chains

Chain L5

28S rRNA [Homo sapiens]

Chain L8

5.8S rRNA [Homo sapiens]

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26