IL_9P7H_106

3D structure

PDB id

9P7H (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human eEF1A-A/T-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

9P7H|1|L5|G|2711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P7H_106 not in the Motif Atlas

Homologous match to IL_8GLP_102

Geometric discrepancy: 0.1893

The information below is about IL_8GLP_102

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

83

Unit IDs

9P7H|1|L5|C|2704
9P7H|1|L5|G|2705
*
9P7H|1|L5|C|2710
9P7H|1|L5|G|2711
9P7H|1|L5|G|2712

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain CI

Transcription factor BTF3

Chain LR

60S ribosomal protein L19

Chain LU

Heparin-binding protein HBp15

Chain LX

60S ribosomal protein L23a