IL_9P7H_255

3D structure

PDB id

9P7H (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human eEF1A-A/T-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

9P7H|1|S2|C|1433, 9P7H|1|S2|C|1434, 9P7H|1|S2|C|1435, 9P7H|1|S2|C|1436, 9P7H|1|S2|C|1437

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P7H_255 not in the Motif Atlas

Homologous match to IL_9PN5_214

Geometric discrepancy: 0.5879

The information below is about IL_9PN5_214

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71421.6

Basepair signature

cWW-cWW

Number of instances in this motif group

38

Unit IDs

9P7H|1|S2|U|1408
9P7H|1|S2|A|1409
*
9P7H|1|S2|U|1432
9P7H|1|S2|C|1433
9P7H|1|S2|C|1434
9P7H|1|S2|C|1435
9P7H|1|S2|C|1436
9P7H|1|S2|C|1437
9P7H|1|S2|A|1438

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SQ

Small ribosomal subunit protein uS9

Chain SU

40S ribosomal protein S20