IL_9P7J_065

3D structure

PDB id

9P7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

UUU*A(PSU)A

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P7J_065 not in the Motif Atlas

Homologous match to IL_9AXU_033

Geometric discrepancy: 0.1162

The information below is about IL_9AXU_033

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

81

Unit IDs

9P7J|1|L5|U|1671
9P7J|1|L5|U|1672
9P7J|1|L5|U|1673
*
9P7J|1|L5|A|1682
9P7J|1|L5|PSU|1683
9P7J|1|L5|A|1684

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LL

Large ribosomal subunit protein eL13

Chain LQ

60S ribosomal protein L18

Chain LT

60S ribosomal protein L21

Chain La

60S ribosomal protein L27a

Chain Lb

Large ribosomal subunit protein eL29