IL_9P7J_223

3D structure

PDB id

9P7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

9P7J|1|S2|G|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P7J_223 not in the Motif Atlas

Homologous match to IL_9PN5_185

Geometric discrepancy: 0.1633

The information below is about IL_9PN5_185

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

42

Unit IDs

9P7J|1|S2|C|931
9P7J|1|S2|G|932
9P7J|1|S2|G|933
9P7J|1|S2|G|934
9P7J|1|S2|G|935
*
9P7J|1|S2|C|1007
9P7J|1|S2|A|1008
9P7J|1|S2|A|1009
9P7J|1|S2|G|1010

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain Lc

60S ribosomal protein L30

Chain SB

40S ribosomal protein S3a

Chain SN

40S ribosomal protein S13

Chain Sa

40S ribosomal protein S26