IL_9P7K_044

3D structure

PDB id

9P7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human post eEF1A-A/T-P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CU*GGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P7K_044 not in the Motif Atlas

Geometric match to IL_7MLX_001

Geometric discrepancy: 0.2371

The information below is about IL_7MLX_001

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

59

Unit IDs

9P7K|1|L5|C|1099
9P7K|1|L5|U|1100
*
9P7K|1|L5|G|1194
9P7K|1|L5|G|1195
9P7K|1|L5|G|1196

Current chains

Chain L5

28S rRNA

Nearby chains