IL_9P7K_213

3D structure

PDB id

9P7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human post eEF1A-A/T-P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAC*GGC

Length

6 nucleotides

Bulged bases

9P7K|1|S2|A|536, 9P7K|1|S2|G|547

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P7K_213 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.1573

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.6

Basepair signature

cWW-cWW

Number of instances in this motif group

38

Unit IDs

9P7K|1|S2|G|535
9P7K|1|S2|A|536
9P7K|1|S2|C|537
*
9P7K|1|S2|G|546
9P7K|1|S2|G|547
9P7K|1|S2|C|548

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Se

Small ribosomal subunit protein eS30