IL_9P7L_002

3D structure

PDB id

9P7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Post-eEF1A-AT-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

UCG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P7L_002 not in the Motif Atlas

Homologous match to IL_2D6F_001

Geometric discrepancy: 0.4308

The information below is about IL_2D6F_001

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

9P7L|1|AT|U|29
9P7L|1|AT|C|30
9P7L|1|AT|G|31
*
9P7L|1|AT|C|41
9P7L|1|AT|G|42
9P7L|1|AT|A|43

Current chains

Chain AT

A/T site tRNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain Se

Small ribosomal subunit protein eS30