IL_9P7W_028

3D structure

PDB id

9P7W (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GCCCGG*UC

Length

8 nucleotides

Bulged bases

9P7W|1|L5|C|501, 9P7W|1|L5|C|502, 9P7W|1|L5|C|503, 9P7W|1|L5|G|504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P7W_028 not in the Motif Atlas

Geometric match to IL_3MXH_004

Geometric discrepancy: 0.2526

The information below is about IL_3MXH_004

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.6

Basepair signature

cWW-cWW

Number of instances in this motif group

38

Unit IDs

9P7W|1|L5|G|500
9P7W|1|L5|C|501
9P7W|1|L5|C|502
9P7W|1|L5|C|503
9P7W|1|L5|G|504
9P7W|1|L5|G|505
*
9P7W|1|L5|U|653
9P7W|1|L5|C|654

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18