IL_9P7W_211

3D structure

PDB id

9P7W (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

9P7W|1|S2|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P7W_211 not in the Motif Atlas

Homologous match to IL_9H3G_186

Geometric discrepancy: 0.2463

The information below is about IL_9H3G_186

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9P7W|1|S2|G|606
9P7W|1|S2|U|607
9P7W|1|S2|C|608
*
9P7W|1|S2|G|635
9P7W|1|S2|C|636

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SD

Small ribosomal subunit protein uS3

Chain SJ

40S ribosomal protein S9

Chain Se

Small ribosomal subunit protein eS30