IL_9P7X_245

3D structure

PDB id

9P7X (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

ACAGGA(OMU)UG*CUCGAUU

Length

16 nucleotides

Bulged bases

9P7X|1|S2|G|1285

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P7X|1|S2|A|1282
9P7X|1|S2|C|1283
9P7X|1|S2|A|1284
9P7X|1|S2|G|1285
9P7X|1|S2|G|1286
9P7X|1|S2|A|1287
9P7X|1|S2|OMU|1288
9P7X|1|S2|U|1289
9P7X|1|S2|G|1290
*
9P7X|1|S2|C|1309
9P7X|1|S2|U|1310
9P7X|1|S2|C|1311
9P7X|1|S2|G|1312
9P7X|1|S2|A|1313
9P7X|1|S2|U|1314
9P7X|1|S2|U|1315

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SK

40S ribosomal protein S10

Chain SM

Small ribosomal subunit protein eS12

Chain Sd

40S ribosomal protein S29

Chain Sf

Ubiquitin-40S ribosomal protein S27a