IL_9P7Y_019

3D structure

PDB id

9P7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A-P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GAAC*GAGUUCAAGAGGGC

Length

18 nucleotides

Bulged bases

9P7Y|1|L5|G|409, 9P7Y|1|L5|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P7Y|1|L5|G|387
9P7Y|1|L5|A|388
9P7Y|1|L5|A|389
9P7Y|1|L5|C|390
*
9P7Y|1|L5|G|401
9P7Y|1|L5|A|402
9P7Y|1|L5|G|403
9P7Y|1|L5|U|404
9P7Y|1|L5|U|405
9P7Y|1|L5|C|406
9P7Y|1|L5|A|407
9P7Y|1|L5|A|408
9P7Y|1|L5|G|409
9P7Y|1|L5|A|410
9P7Y|1|L5|G|411
9P7Y|1|L5|G|412
9P7Y|1|L5|G|413
9P7Y|1|L5|C|414

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LP

60S ribosomal protein L17

Chain LY

60S ribosomal protein L26

Chain Ll

60S ribosomal protein L39