IL_9P8C_260

3D structure

PDB id

9P8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 (rotate3) without E tRNA state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

G(OMC)CC*GUA(6MZ)C

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P8C|1|S2|G|1702
9P8C|1|S2|OMC|1703
9P8C|1|S2|C|1704
9P8C|1|S2|C|1705
*
9P8C|1|S2|G|1829
9P8C|1|S2|U|1830
9P8C|1|S2|A|1831
9P8C|1|S2|6MZ|1832
9P8C|1|S2|C|1833

Current chains

Chain S2

18S rRNA

Nearby chains

Chain CD

SERPINE1 mRNA-binding protein 1

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Ln

60S ribosomal protein L41