IL_9P8H_035

3D structure

PDB id

9P8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

AAGG*CAGCAGCACU

Length

14 nucleotides

Bulged bases

9P8H|1|L5|A|932, 9P8H|1|L5|C|934, 9P8H|1|L5|A|935, 9P8H|1|L5|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P8H|1|L5|A|732
9P8H|1|L5|A|733
9P8H|1|L5|G|734
9P8H|1|L5|G|735
*
9P8H|1|L5|C|928
9P8H|1|L5|A|929
9P8H|1|L5|G|930
9P8H|1|L5|C|931
9P8H|1|L5|A|932
9P8H|1|L5|G|933
9P8H|1|L5|C|934
9P8H|1|L5|A|935
9P8H|1|L5|C|936
9P8H|1|L5|U|937

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a