IL_9P9K_032

3D structure

PDB id

9P9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with EIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CUGGG*CG

Length

7 nucleotides

Bulged bases

9P9K|1|L5|G|729, 9P9K|1|L5|G|730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P9K_032 not in the Motif Atlas

Geometric match to IL_8GLP_036

Geometric discrepancy: 0.0553

The information below is about IL_8GLP_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75501.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

9P9K|1|L5|C|727
9P9K|1|L5|U|728
9P9K|1|L5|G|729
9P9K|1|L5|G|730
9P9K|1|L5|G|731
*
9P9K|1|L5|C|938
9P9K|1|L5|G|939

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L7

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a