IL_9P9K_109

3D structure

PDB id

9P9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with EIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GCU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P9K_109 not in the Motif Atlas

Homologous match to IL_8GLP_109

Geometric discrepancy: 0.0408

The information below is about IL_8GLP_109

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9P9K|1|L5|G|2889
9P9K|1|L5|C|2890
9P9K|1|L5|U|2891
*
9P9K|1|L5|A|3610
9P9K|1|L5|A|3611
9P9K|1|L5|C|3612

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19