IL_9PA7_010

3D structure

PDB id

9PA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S consensus ribosome with EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GCUCCCC*GGGCCC

Length

13 nucleotides

Bulged bases

9PA7|1|L5|C|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PA7|1|L5|G|169
9PA7|1|L5|C|170
9PA7|1|L5|U|171
9PA7|1|L5|C|172
9PA7|1|L5|C|173
9PA7|1|L5|C|174
9PA7|1|L5|C|175
*
9PA7|1|L5|G|261
9PA7|1|L5|G|262
9PA7|1|L5|G|263
9PA7|1|L5|C|264
9PA7|1|L5|C|265
9PA7|1|L5|C|266

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13

Chain Lh

60S ribosomal protein L35