IL_9PA7_034

3D structure

PDB id

9PA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S consensus ribosome with EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

AAGG*CAGCAGCACU

Length

14 nucleotides

Bulged bases

9PA7|1|L5|A|932, 9PA7|1|L5|C|934, 9PA7|1|L5|A|935, 9PA7|1|L5|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PA7|1|L5|A|732
9PA7|1|L5|A|733
9PA7|1|L5|G|734
9PA7|1|L5|G|735
*
9PA7|1|L5|C|928
9PA7|1|L5|A|929
9PA7|1|L5|G|930
9PA7|1|L5|C|931
9PA7|1|L5|A|932
9PA7|1|L5|G|933
9PA7|1|L5|C|934
9PA7|1|L5|A|935
9PA7|1|L5|C|936
9PA7|1|L5|U|937

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a