IL_9PA7_082

3D structure

PDB id

9PA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S consensus ribosome with EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

9PA7|1|L5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PA7|1|L5|U|1957
9PA7|1|L5|A|1958
9PA7|1|L5|U|1959
9PA7|1|L5|A|1960
9PA7|1|L5|G|1961
9PA7|1|L5|A|1962
9PA7|1|L5|C|1963
9PA7|1|L5|A|1964
9PA7|1|L5|G|1965
*
9PA7|1|L5|C|2022
9PA7|1|L5|C|2023
9PA7|1|L5|G|2024
9PA7|1|L5|A|2025
9PA7|1|L5|A|2026

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lm

Large ribosomal subunit protein eL40

Chain Ls

60S acidic ribosomal protein P0