IL_9PA7_127

3D structure

PDB id

9PA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S consensus ribosome with EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GACAU*AUCGUU

Length

11 nucleotides

Bulged bases

9PA7|1|L5|A|3947, 9PA7|1|L5|C|3948

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PA7|1|L5|G|3946
9PA7|1|L5|A|3947
9PA7|1|L5|C|3948
9PA7|1|L5|A|3949
9PA7|1|L5|U|3950
*
9PA7|1|L5|A|4062
9PA7|1|L5|U|4063
9PA7|1|L5|C|4064
9PA7|1|L5|G|4065
9PA7|1|L5|U|4066
9PA7|1|L5|U|4067

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Li

60S ribosomal protein L36

Chain SB

40S ribosomal protein S3a