IL_9PA7_162

3D structure

PDB id

9PA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S consensus ribosome with EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GAAACGG*CCUCGC

Length

13 nucleotides

Bulged bases

9PA7|1|L5|C|4895

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PA7|1|L5|G|4891
9PA7|1|L5|A|4892
9PA7|1|L5|A|4893
9PA7|1|L5|A|4894
9PA7|1|L5|C|4895
9PA7|1|L5|G|4896
9PA7|1|L5|G|4897
*
9PA7|1|L5|C|4923
9PA7|1|L5|C|4924
9PA7|1|L5|U|4925
9PA7|1|L5|C|4926
9PA7|1|L5|G|4927
9PA7|1|L5|C|4928

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a