IL_9PBE_022

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

9PBE|1|L5|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PBE|1|L5|A|466
9PBE|1|L5|U|467
9PBE|1|L5|U|468
9PBE|1|L5|C|469
9PBE|1|L5|A|470
9PBE|1|L5|A|471
9PBE|1|L5|C|472
*
9PBE|1|L5|G|682
9PBE|1|L5|C|683
9PBE|1|L5|G|684
9PBE|1|L5|C|685
9PBE|1|L5|A|686
9PBE|1|L5|U|687
9PBE|1|L5|U|688
9PBE|1|L5|U|689

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain Lr

60S ribosomal protein L28