IL_9PBE_024

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

9PBE|1|L5|A|667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PBE_024 not in the Motif Atlas

Homologous match to IL_8GLP_028

Geometric discrepancy: 0.5265

The information below is about IL_8GLP_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87975.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

9PBE|1|L5|G|487
9PBE|1|L5|G|488
*
9PBE|1|L5|C|665
9PBE|1|L5|G|666
9PBE|1|L5|A|667
9PBE|1|L5|C|668
9PBE|1|L5|C|669

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain Lr

60S ribosomal protein L28