IL_9PBE_034

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CCGGCG*CCCCG

Length

11 nucleotides

Bulged bases

9PBE|1|L5|C|738

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PBE|1|L5|C|737
9PBE|1|L5|C|738
9PBE|1|L5|G|739
9PBE|1|L5|G|740
9PBE|1|L5|C|741
9PBE|1|L5|G|742
*
9PBE|1|L5|C|922
9PBE|1|L5|C|923
9PBE|1|L5|C|924
9PBE|1|L5|C|925
9PBE|1|L5|G|926

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14