IL_9PBE_057
3D structure
- PDB id
- 9PBE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 80S ribosome (composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- CGAAG*UGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PBE_057 not in the Motif Atlas
- Homologous match to IL_8GLP_059
- Geometric discrepancy: 0.036
- The information below is about IL_8GLP_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15190.5
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 29
Unit IDs
9PBE|1|L5|C|1551
9PBE|1|L5|G|1552
9PBE|1|L5|A|1553
9PBE|1|L5|A|1554
9PBE|1|L5|G|1555
*
9PBE|1|L5|U|1572
9PBE|1|L5|G|1573
9PBE|1|L5|G|1574
9PBE|1|L5|A|1575
9PBE|1|L5|G|1576
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LR
- 60S ribosomal protein L19
- Chain Lp
- 60S ribosomal protein L37a
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