IL_9PBE_126

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GACAU*AUCGUU

Length

11 nucleotides

Bulged bases

9PBE|1|L5|A|3947, 9PBE|1|L5|C|3948

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PBE|1|L5|G|3946
9PBE|1|L5|A|3947
9PBE|1|L5|C|3948
9PBE|1|L5|A|3949
9PBE|1|L5|U|3950
*
9PBE|1|L5|A|4062
9PBE|1|L5|U|4063
9PBE|1|L5|C|4064
9PBE|1|L5|G|4065
9PBE|1|L5|U|4066
9PBE|1|L5|U|4067

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Li

60S ribosomal protein L36

Chain SB

40S ribosomal protein S3a